Department
The most widespread microorganisms were CoNS ( n = 35), which were found in all samples, regardless of the collection site. Klebsiella pneumoniae was identified in 100% of ICU samples and in 64% of RID samples. Thus, these two species were the main contaminants under the studied conditions. In addition, Achromobacter spp. (23%), Staphylococcus aureus (15%), and Pseudomonas aeruginosa (8%) were detected in the ICU. For RID, the distribution was slightly different, with Pseudomonas aeruginosa identified in about one-third of the samples (27%) and Achromobacter spp. identified in 14% of samples, while no Staphylococcus aureus was detected. Burkholderia cepacia complex was not found in any of the samples. The most contaminated surfaces were the floor (100%) and door handles (100%) ( Table S2, Supplementary Materials ).
Strict parameters of filtration quality and elimination of chimeric sequences were applied to microbiome data. After all filtering steps and elimination of low-quality reads, as well as chimeric sequences, 2,389,555 classified sequences were obtained and assigned to 8873 amplicon sequence variants (ASV) related to 990 genera and 357 families. All samples have reached a saturation point regarding α-diversity at a depth of 41,140 reads.
The taxonomic distribution was identical between the two departments at the family level ( Figure 1 a). The first eight most frequent families were almost identical for the mentioned departments. The main differences in the 15 most widespread families were Weeksellaceae, Sphingomonadaceae, and Oxalobacteraceae for the ICU department, whereas, for the RID, there were Flavobacteriaceae, Aerococcaceae, and Prevotellaceae families. We also identified distinctions in the dominance of the most common families depending on the surface type ( Figure 1 b and Figure S1, Supplementary Materials ).
Relative taxonomic distribution at the family level: ( a ) by department; ( b ) by department and surface type. Families with a proportion of <2% are listed as “Other”. ICU—Intensive Care Unit; RID—Respiratory Infections Department.
The alpha-diversity did not differ significantly between the samples collected in the ICU department and RID regarding the Chao1 and Shannon index (excluding floor surface comparison, p = 0.041) ( Figure 2 , Table S2 and Figure S2, Supplementary Materials ).
Dependence of α-diversity on the department and surface type: ( a ) diversity measured by the Chao1 index; ( b ) diversity measured by the Shannon index. ICU—Intensive Care Unit; RID—Respiratory Infections Department. Box plots with middle line denote the median, the box denotes the interquartile range (IQR), and 1.5 IQR ranges (whiskers). ns—no significance detected.
According to the observed diversity, it is worth noting that Chao1 was higher for the floor surface regardless of the department, and the mean ± standard deviation value was 1234.7 ± 254.22 and 939.6 ± 547.46 for the ICU and RID, respectively. This pattern was maintained for the Shannon index, with the mean ± standard deviation of 5.64 ± 0.82 (ICU department) and 4.66 ± 0.87 (RID). It was approximately at the same level for door handles and other types of surfaces (swabs from sinks, toilet seats, and bedside table surfaces). Overall, the PCR results were reproduced, and the samples from the floor surface showed better diversity.
We performed beta-diversity analysis by using PCoA based on Bray–Curtis dissimilarities. There were demonstrated both common and unique clusters for each department ( Figure 3 and Figure S3, Supplementary Materials ).
Bray–Curtis dissimilarity PCoA was used to generate ordination of beta-diversity in two departments. Principal coordinates 1 and 2 (Axis.1 and Axis.2) explained 28% and 17.6% of the variance in Bray–Curtis dissimilarity, respectively. Samples are colored according to the department (ICU—Intensive Care Unit; RID—Respiratory Infections Department), symbols indicate the type of sample.
For the samples obtained from the floor in the ICU, we observed the formation of a separate cluster, indicating the high diversity of these samples. Other samples were evenly distributed throughout. We found significant differences in the multivariate PERMANOVA model with predictors such as department and description (surface type) (F = 3.48, R 2 = 0.091, p = 0.0015 and F = 2.24, R 2 = 0.125, p = 0.0036, respectively; Table S3, Supplementary Materials ).
We used random forest and genera as classification features for department identification. This model had an out-of-bag error rate of 25.71%, with a substantial class error (42.86%) estimated for six ICU samples mistakenly assigned to RID. This may have been due to the large number of samples involved in the creation of such a model (21 RID samples versus 14 ICU samples). Prevotella , Polaromonas , Psychrobacter , and Corynebacterium were the most important genera for the precise classification of departments (MDA: 30.349, 20.570, 16.659, and 15.686, respectively; Figure 4 and Table S4, Supplementary Materials ).
Random forest classification analysis of ICU ( n = 12) and RID ( n = 21) samples, showing taxonomic features with the highest classification variable importance for correctly identifying the department. ICU—Intensive Care Unit; RID—Respiratory Infections Department.
The presence of coinfection among COVID-19 patients has been demonstrated in a growing number of studies. The conducted meta-analyses showed extremely heterogeneous data on the number of coinfections, reaching up to 50% of cases [ 16 ]. At the same time, nosocomial infections play a significant role in the formation of coinfection, influencing the course of the disease and increasing mortality [ 18 ].
Many recommendations for coronavirus infection treatment include the use of antibacterial drugs as a preventative measure against bacterial infections [ 38 , 39 , 40 ]. This certainly raises concerns about the overuse of antibiotics and the emergence of multidrug-resistant bacteria, which is already a global public health problem. Monitoring is required for bacterial pathogen identification given the high chances of transmission of bacterial infections in hospital settings and the necessity for rational use of antibiotics. This information will allow eliminating the reservoirs of infections and promptly preventing outbreaks of nosocomial infections.
Hospital surfaces are often contaminated with various microorganisms and can be potential reservoirs for the spread of microbial agents [ 22 ]. In this regard, we studied various surfaces in the Infectious Diseases Hospital in Moscow. The choice of surfaces for our study was determined by the characteristics of each department. Patients in critical condition were admitted to the ICU department. Given the immobility of these patients, our attention was focused on surfaces such as the floor, door handles, and artificial lung ventilation apparatus screens, i.e., the main surfaces that the medical staff comes into contact with on a daily basis. On the other hand, in the RID, patients can move around inside their wards and visit the bathrooms. In this regard, we expanded the list of studied surfaces and included bedside tables, toilet seats, switches, window handles, etc. ( Table S2 Supplementary Materials ).
In our study, all the surfaces were contaminated with at least one pathogen, regardless of the department. CoNS and Klebsiella pneumoniae were the most frequently detected pathogens and were found in almost every surface swab test (for CoNS in all samples). In general, coagulase-negative staphylococcus represents the normal human skin flora and is less pathogenic than Staphylococcus aureus [ 41 ]. However, cases of CoNS bloodstream infections (BSI) and catheter-related bloodstream infections (CRBSI) have been reported among patients with COVID-19 [ 13 ]. At the same time, Klebsiella pneumoniae has been associated with several nosocomial outbreaks and occurs in patients alongside new coronavirus infection [ 18 , 29 , 42 , 43 ].
A search for pathogens such as Achromobacter spp. and Burkholderia cepacia complex was also conducted. These microorganisms are usually identified among people with weakened immune systems and patients with cystic fibrosis. Recently, these microorganisms have been noted as etiological agents that can cause pneumonia [ 44 , 45 ]. Importantly, only Burkholderia cepacia complex was found in the respiratory tract of patients with COVID-19 [ 46 , 47 ].
The microbiome study allowed us to confirm the assumptions regarding the diversity of bacterial composition on the floor surface and door handle. The results of qPCR and microbiome sequencing data were consistent.
Polaromonas , Sphingomonas , and Massilia genera were the most characteristic for the ICU department, while Prevotella , Psychrobacter , Corynebacterium , and Veillonella genera were the most characteristic for the RID. The genera data can be considered as a “marker” for department identification. It is worth noting that these genera are representative of both a normal human microflora and an ordinary environment. However, some representatives from this list have been found in the bloodstream of COVID-19 patients ( Sphingomonas [ 48 ]), whereas representatives of Prevotella were more common in the upper respiratory tract among patients with SARS-CoV-2 infection and Corynebacterium was represented among healthy patients [ 49 ]. Oropharyngeal microbiome analysis of patients with COVID-19 demonstrated high levels of Veillonella [ 50 ].
In addition, Staphylococcus aureus and Pseudomonas aeruginosa were identified on the door handles and floor surface. Moreover, Pseudomonas aeruginosa was found on the sink mixer located in the ward. In previous studies, contamination with these microorganisms on door handles was also demonstrated. It is worth noting that the detection rate of such pathogens was higher in studies similar to ours (more than 6%) [ 22 , 51 ]. However, given the pathogenic potential of these microorganisms, their detection in the ICU department is of particular concern. The results of our study on Klebsiella pneumoniae , Pseudomonas pneumoniae , and Staphylococcus aureus spread are consistent with previously published data, despite the peculiarities of health systems in different countries [ 52 , 53 , 54 , 55 ]. These microorganisms are inclined toward biofilm formation and possess other pathogenicity factors [ 29 ], which increase the risk of infection in patients with coronavirus infection.
More importantly, the nasopharyngeal smears of patients admitted to the hospital did not contain above-mentioned pathogens; therefore, we consider the patients themselves an unlikely source of contamination for the surrounding surfaces. Apparently, the spread of pathogens may be enhanced by medical staff, whereas it may also be associated with low cleaning efficiency and contamination by previously hospitalized patients.
Taking the obtained results into account, these surfaces (floor and door handles) can be considered as potential reservoirs of nosocomial infections that increase the risk of infection spread both inside and outside the hospital. The results indicate the danger of insufficient regular disinfection of surfaces, regardless of department, at the Infectious Diseases Hospital.
In this study, we demonstrated a combined approach to characterize the microbiome of different surfaces for the presence of pathogens that could induce comorbid conditions in patients with COVID-19. Epidemiological monitoring is extremely important for preventing the outbreaks of disease in a hospital setting as well as for the rational use of antimicrobial drugs and timely implementation of decontamination measures. This will improve the epidemiological situation and improve the quality of medical care.
The following are available online at https://www.mdpi.com/article/10.3390/ijerph18179042/s1 , Table S1: List of oligonucleotide primers used in this study. Table S2: Swab collection points from various surfaces. Table S3: PERMANOVA model, with predictors department and description explaining 21.5% of among-sample diversity (Bray–Curtis dissimilarity). Table S4: Random forest classification models of department. Figure S1: Relative taxonomic distribution at the family level for all surface types. Families with a proportion of <2% are listed as “Other”. Figure S2: Dependence of α-diversity on the department and surface types: (a) diversity measured by the Chao1 index; (b) diversity measured by the Shannon index. Figure S3: Ordination of beta-diversity in two departments and surface types. Bray–Curtis dissimilarity PCoA was used to characterize the diversity. Samples are colored according to the type of surface; symbol indicates the department.
Conceptualization, A.A.P., V.A.G. and A.L.G.; methodology, A.A.P., D.D.K., E.V.D., N.A.K., A.A.P. and V.A.G.; data collection and processing, A.A.P., D.D.K., E.V.D. and N.A.K.; collection and description of clinical material, O.A.B. and L.V.K.; sequencing, A.A.P. and D.D.K.; formal analysis, A.A.P., D.V.V. and N.A.K.; data curation, A.A.P. and D.D.K.; writing—original draft preparation, A.A.P.; writing—review and editing, D.V.V., N.A.K., A.P.T. and V.A.G.; visualization, A.A.P. and D.D.K.; project administration, A.A.P., V.A.G. and A.L.G.; funding acquisition, V.A.G. and A.L.G. All authors have read and agreed to the published version of the manuscript.
This work was supported by the Ministry of Health of the Russian Federation and carried out in the frame of State assignment 056-00034-20-00.
The study was conducted according to the guidelines of the Declaration of Helsinki, and approved by the Institutional local the Ethics Committee of the First Moscow Infectious Diseases Hospital, Moscow Department of Health, Moscow, Russia (Protocol No. 2/B, date of approval: 20 May 2020). Written informed consent was obtained from all participants.
Informed consent was obtained from all subjects involved in the study.
Conflicts of interest.
The authors declare no conflict of interest. The funders had no role in the design of this study; in the collection, analysis, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.
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It is more than 5 years since the prescribed deadline, 30 December 2002, for all categories of towns covered by the Biomedical Waste Management (BMW) Rules 1998 elapsed. Various reports indicate that the implementation of the BMW Rules is not satisfactory even in the large towns and cities in India. Few studies have looked at the ;macro system' of the biomedical waste management in India. In this context the present study describes the role of the important stakeholders who comprise the 'macrosystem' namely the pollution control board, common waste management facilities, municipal corporation, state government (Directorate of Medical Education and Health Systems Development Project), professional agencies such as the India Medical Association and non-governmental organizations, in the implementation of BMW rules in a capital city of a state in south India. Brief descriptions of the ;micro-system' (i.e. biomedical waste management practices within a hospital) of six hospitals of different types in the study city are also presented.
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2007, Waste management
Journal of Sustainable Chemistry and Pharmacy
Konstantin Aravossis ΑΡΑΒΩΣΗΣ , Gregory Kyriakopoulos , A. Vantarakis
At this study a multi-criteria model was developed to examine the available procedures, techniques and methods of handling infectious waste in the large healthcare unit of University Regional General Hospital of Patras, Western Greece. Particularly, this study examined the: a) current legislation and Directives issued for medical waste management at Greece and among the other EU-members, b) contribution of healthcare wastes (HCW) generation rate on social and economic parameters in selected European countries, c) available procedures, techniques, and methods upon the disposal of infectious wastes at the healthcare studied, and, d) propositions for integrated management of such hazardous wastes. Specifically, the Analytic Hierarchy Process (AHP) methodology was applied under pair wise comparison matrices in two stages: 1) the scale factors and the indicators , and 2) the criteria and their sub-criteria. The assessment of these pair wise matrices included the indicators and the sub-criteria. Subsequently, two pair wise comparison matrices, upon a) the "Fulfillment of environmental objectives" indicator and b) the "Energy consumption" sub criterion, were denoted. The AHP methodology yielded good results; however there is still space of improving the environmental performance. The normalized relative weights obtained for the criteria and sub criteria motivated specific actions that have to be handled. Particularly, the results indicated a very good value in environmental management criteria due the values obtained for the commitment towards the environmental policy standards and the waste management procedures. However, further improvements on staff awareness (such as development programs to enhance sensitivity) and more green purchasing suppliers, should be further addressed.
Health Systems and Policy Research
Sadia Hassan Sherani
Abdoliman Amouei
birol elevli
The fundamental information for selecting and designing the most efficient treatment method of hos - pital waste is obtained by means of waste composition analysis. Therefore, the aim of this study was to evaluate the physical and elemental composition of waste in four hospitals in Sivas, Turkey. The results should help us select and design proper waste disposal. During the study period it was estimated that the daily waste generation rate of four hospitals was 985 kg/day, projected to be 1267 kg/day in 2015. Further- more, analysis indicated that the moisture content of wastes was 14,2 % . The four hospital wastes consist of 92% combustible wastes and 8% noncombustible wastes by mass. The combustible wastes constitute paper (16%), textiles (10,2%), cardboard (4%), plastics (41,2%) and food waste (17%). Since the ratio of combustible waste is high, the incineration method has been suggested as a proper disposal method.
International Journal of Environment and Waste Management
Rachid CHAIB
Journal Biomedical and Biopharmaceutical Research
Beatriz Edra
Mohammad Ahmadpour
Background and Objective: Aggregating, sorting, and disposing of hospital wastes is of critical importance, given the risk they impose on the public health. Therefore, the present study is aimed at examining medical waste management system in educational medical centers associated with Urmia University of Medical Science in 2013. Materials and Methods: The study was carried out as a cross sectional work in all medical and educational centers associate with Urmia University of Medical Science through description, questionnaire, observation, and interview. The collected data was analyzed in Excel. Results: The results showed that 40% of the hospitals under study had received waste management operation plan and only 20% of them had prepared a list of hazardous materials produced in the hospital. Standards of handling chemical waste was not followed in any of the hospitals. The centers under study produced 4465 kg medical waste every day; out of which, 1897 kg (42%) was infectious waste...
Dr. Kalsoom Saleem
waste-forum
Fatmawada S.
This study aims at analyzing the management of hazardous medical waste at General Regional Hospital of Biak, Papua. The method used is descriptive research with a qualitative approach. The results showed that the General Regional Hospital of Biak, Papua had not implemented the Standard Operational Procedures (SOP) which had been determined in the handling the hazardous waste in the hospital, such as the container stage, transportation stage, and temporary storage stage up to the waste treatment stage. The lack of training for hospital staff has an impact on the implementation of hazardous medical waste management planning. The General Regional Hospital of Biak, Papua had not implemented the SOP for handling the hazardous waste in the hospital. The hospital need an adequate strategy for hospital hazardous medical waste management which can greatly assist in reducing the harmful effects of hospital waste.
“Sustainable Development and Planning II”, WIT Press. UK,
Konstantin Aravossis ΑΡΑΒΩΣΗΣ
The main objective of this study is the evaluation of medical waste management in Thessaly region, Greece. Nowadays, medical waste treatment and disposal is one of the most important problems in many countries. The reason is simple. Medical waste and specifically infectious medical waste disposal could be extremely dangerous, especially if it is not controlled, according to the basic principles of waste management. Our research was carried out in the 5 hospitals (1 university and 4 general hospitals) that operate in the region of Thessaly and our findings have shown that most of hospitals use the method of steam sterilization in a mobile treatment unit for their waste treatment. More specifically, private companies, which deal with medical waste treatment, visit the hospitals once per week and sterilize the waste in the mobile unit. On the other hand, the university hospital uses the method of incineration for its waste treatment. Regarding the incinerator, it should be noticed that it is a double chamber incinerator. The primary combustion chamber is used for the waste incineration and the secondary combustion chamber is used for the incineration of the fumes. This incinerator operates without the necessary equipment for the air pollution minimization. The medical wastes that are produced in the other medical facilities in the region are disposed without specific care for the environment. It is the outcome of our research that planning about the optimal medical waste management is essential in the effort to achieve an integrated medical waste management according to the principles of sustainable development.
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Sustainable Chemistry and Pharmacy
Gregory Kyriakopoulos
Dimitris Komilis
Health Scope
mohamed idris
sushma rudraswamy
Journal of Advances in Environmental Health Research
Amir Reshadi
Journal of Advances in Environmental Health Research (JAEHR)
hamideh akbari
Waste Management
MARIANTHI KERMENIDOU
European Science Review
Stela Meçaj
Mekonnen Getahun
PINTU KUMAR
Waste management
mehrdad askarian
siddaram kalyani
International Journal of Scientific Research in Environmental Sciences
Isam Shahrour
International Journal of Industrial Management
Suriati Deraman
Parandeh M, Khanjani N. The Quantity and Quality of Hospital Waste in Kerman Province and an Overview of Hospital Waste quantities in Iran. World Journal of Applied Sciences, 2012; 17(4):473-479.
Narges Khanjani
Dr. Gawad Alwabr , Ahmed Al-Mikhlafi
Omofunmi Olorunwa
Environmental Progress
Ashok Kumar A KBSS
Waste management & research : the journal of the International Solid Wastes and Public Cleansing Association, ISWA
mustafa ali
COMMENTS
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Hospital waste management is an imperative environmental and public safety issue, due to the waste's infectious and hazardous character. This paper examines the existing waste strategy of a typical hospital in Greece with a bed capacity of 400-600. The segregation, collection, packaging, storage, transportation and disposal of waste were ...
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282. refers to the temporary holding of small quantities of waste near the point of generation, storage of waste is character-ized by longer holding periods and large waste quantity. Stor-age areas are usually located near where the waste is treated. Any offsite holding of waste is also considered storage.
Biomedical and Biopharmaceutical Research Health and Society │ Saúde e Sociedade Biomed Biopharm Res. , 2017; (14) 1: , 23-36 DOI: 10.19277/bbr.14.1.147 Jornal de Investigação Biomédica e Biofarmacêutica Hospital waste management - Case study Gestão de Resíduos Hospitalares - Estudo de caso Beatriz Edra1, Catarina Maia 2, Filomena Cardoso 2, José Manuel Silva1 e Maria do Céu Costa3 ...
The study was carried out in the First Moscow Infectious Diseases Hospital (Russia), one of the capital's medical institutions designated for the treatment of patients with COVID-19. During the first wave of COVID-19, about 80 patients with moderate to severe courses of the disease were admitted every day.
Hospital waste management is an imperative environmental and public safety issue, due to the waste's infectious and hazardous character. This paper examines the existing waste strategy of a typical hospital in Greece with a bed capacity of 400-600. The segregation, collection, packaging, storage, transportation and disposal of waste were ...
Objective: To assess the current status of Bio-Medical Waste Management at N.C. Medical College and Hospital, Gap Analysis visa -vis Bio-Medical Waste Management Rules, 2016, To initiate necessary interventions for ensuring compliance with new BMW Management of Rules, 2016, Assess the impact of the implementation strategy and to recommend ...
[Show full abstract] Hisar, India having 110 bedded hospital has been chosen for case study and its compliance with Regulatory Notifications for Bio-medical Waste (Management and Handling) Rules ...
Hazardous Waste. Medical Waste Disposal. It is more than 5 years since the prescribed deadline, 30 December 2002, for all categories of towns covered by the Biomedical Waste Management (BMW) Rules 1998 elapsed. Various reports indicate that the implementation of the BMW Rules is not satisfactory even in the large towns and cities in India. ….
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